0000-0001-5758-9416
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Scopus ID: 14623077600
PBN - polon
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Topics:
Andrea Cappannini, Angana Ray, Elżbieta Purta, Sunandan Mukherjee, Pietro Boccaletto, S. Naeim Moafinejad, Antony Lechner2, Charles Barchet, Bruno Klaholz, Filip Stefaniak, Janusz M. Bujnicki
MODOMICS: a database of RNA modifications and related information. 2023 update
Nucleic Acids Research, gkad1083 2023
IF: 14.9 (2022); 5-Year IF: 17.210
The database described in the paper: https://iimcb.genesilico.pl/modomics/
Topics:
Eugene F. Baulin; Sunandan Mukherjee; S. Naeim Moafinejad; Tomasz K. Wirecki; Nagendar Goud Badepally; Farhang Jaryani; Filip Stefaniak; Masoud Amiri Farsani; Angana Ray; Tales Rocha de Moura; Janusz M. Bujnicki
RNA tertiary structure prediction in CASP15 by the GeneSilico group: Folding simulations based on statistical potentials and spatial restraints.
Proteins: Structure, Function, and Bioinformatics 2023 | DOI: 10.1002/prot.26575
IF: 2.9
Topics:
Natalia A Szulc, Zuzanna Mackiewicz, Janusz M Bujnicki, Filip Stefaniak
Structural interaction fingerprints and machine learning for predicting and explaining binding of small molecule ligands to RNA
Briefings in Bioinformatics, bbad187 2023 | DOI: 10.1093/bib/bbad187
IF: 13.994
Topics:
Natalia A Szulc, Zuzanna Mackiewicz, Janusz M Bujnicki, Filip Stefaniak
fingeRNAt—A novel tool for high-throughput analysis of nucleic acid-ligand interactions
PLOS Computational Biology 18(6): e1009783 2022 | DOI: 10.1371/journal.pcbi.1009783
IF: 4.779 (PLOS does not consider Impact Factor to be a reliable or useful metric to assess the performance of individual articles.)
Topics:
Stypik, Mariola, Marcin Zagozda, Stanisław Michałek, Barbara Dymek, Daria Zdżalik-Bielecka, Maciej Dziachan, Nina Orłowska, Paweł Gunerka, Paweł Turowski, Joanna Hucz-Kalitowska, Aleksandra Stańczak, Paulina Stańczak, Krzysztof Mulewski, Damian Smuga, Filip Stefaniak, Lidia Gurba-Bryśkiewicz, Arkadiusz Leniak, Zbigniew Ochal, Mateusz Mach, Karolina Dzwonek, Monika Lamparska-Przybysz, Krzysztof Dubiel, and Maciej Wieczorek.
Design, Synthesis, and Development of pyrazolo[1,5-a]pyrimidine Derivatives as a Novel Series of Selective PI3Kδ Inhibitors: Part I—Indole Derivatives
Pharmaceuticals 15, no. 8: 949, 2022 | DOI: 10.3390/ph15080949
IF: 5.215; 5-Year IF: 5.711
Topics:
Natalia A. Szulc, Filip Stefaniak, Małgorzata Piechota, Andrea Cappannini, Janusz M. Bujnicki, Wojciech Pokrzywa
DEGRONOPEDIA - a web server for proteome-wide inspection of degrons
bioRxiv 2022.05.19.492622 | DOI: 10.1101/2022.05.19.492622
The webserver described in the paper: https://degronopedia.com/
Topics:
Pietro Boccaletto, Filip Stefaniak, Angana Ray, Andrea Cappannini, Sunandan Mukherjee, Elżbieta Purta, Małgorzata Kurkowska, Niloofar Shirvanizadeh, Eliana Destefanis, Paula Groza, Gülben Avşar, Antonia Romitelli, Pınar Pir, Erik Dassi, Silvestro G Conticello, Francesca Aguilo, Janusz M Bujnicki
MODOMICS: a database of RNA modification pathways. 2021 update
Nucleic Acids Research, Volume 50, Issue D1, Pages D231–D235, 7 January 2022 | DOI: 10.1093/nar/gkab1083
IF: 19.160; 5-Year IF: 17.210
The database described in the paper: https://iimcb.genesilico.pl/modomics/
Topics:
Pritha Ghosh, Chandran Nithin, Astha Joshi, Filip Stefaniak, Tomasz K. Wirecki, Janusz M. Bujnicki
Computational Modeling Methods for 3D Structure Prediction of Ribozymes
Ribozymes, Volume 2, Chapter 33; pp 861-881, 2021 | DOI: 10.1002/9783527814527.ch33
Topics:
Filip Stefaniak, Janusz M Bujnicki
AnnapuRNA: A scoring function for predicting RNA-small molecule binding poses
PLOS Computational Biology, February 1, 2021 | DOI: journal.pcbi.1008309
IF: 4.700
AnnapuRNA repository: github
Topics:
Paweł Brzuzan, Hanna Mazur-Marzec, Maciej Florczyk, Filip Stefaniak, Anna Fidor, Robert Konkel, Maciej Woźny
Luciferase reporter assay for small-molecule inhibitors of MIR92b-3p function: Screening cyanopeptolins produced by Nostoc from the Baltic Sea
Toxicology in Vitro, 2020, Volume 68, 104951 | DOI: 10.1016/j.tiv.2020.104951
IF: 2.959
Topics:
Tomasz K Wirecki, Katarzyna Merdas, Agata Bernat, Michał J Boniecki, Janusz M Bujnicki, and Filip Stefaniak
RNAProbe: a web server for normalization and analysis of RNA structure probing data
Nucleic Acids Research, 2020, Volume 48, Issue W1, Pages W292–W299 | DOI: 10.1093/nar/gkaa396
IF: 16.971; 5-Year IF: 15.542
The web server described in the paper: https://rnaprobe.genesilico.pl/
Topics:
Gleb Andryianau, Michal Kowalski, Michal C. Piotrowicz, Adam A. Rajkiewicz, Barbara Dymek, Piotr L. Sklepkiewicz, Elzbieta Pluta, Filip Stefaniak, Wojciech Czestkowski, Sylwia Olejniczak, Marzena Mazur, Piotr Niedziejko, Robert Koralewski, Krzysztof Matyszewski, Mariusz Gruza, Agnieszka Zagozdzon, Magdalena Salamon, Aleksandra Rymaszewska, Mikolaj Welzer, Karolina Dzwonek, Jakub Golab, Jacek Olczak, Agnieszka Bartoszewicz, and Adam Golebiowski
Benzoxazepine-Derived Selective, Orally Bioavailable Inhibitor of Human Acidic Mammalian ChitinaseACS Med. Chem. Lett. 2020, 11, 6, Pages 1228–1235 | DOI: 10.1021/acsmedchemlett.0c00092
IF: 3.975 (2019)
Topics:
Marzena Mazur, Barbara Dymek, Robert Koralewski, Piotr Sklepkiewicz, Sylwia Olejniczak, Marcin Mazurkiewicz, Michał Piotrowicz, Magdalena Salamon, Karol Jędrzejczak, Agnieszka Zagozdzon, Wojciech Czestkowski, Krzysztof Matyszewski, Bartłomiej Borek, Agnieszka Bartoszewicz, Elżbieta Pluta, Aleksandra Rymaszewska, Witold Mozga, Filip Stefaniak, Paweł Dobrzański, Karolina Dzwonek, Jakub Golab, Adam Golebiowski, and Jacek Olczak
Development of Dual Chitinase Inhibitors as Potential New Treatment for Respiratory System Diseases
Journal of Medicinal Chemistry, 62 (15), 2019, Pages 7126-7145 | DOI: 10.1021/acs.jmedchem.9b00681
IF: 6.205 (2019)
Topics:
Paweł Mitkowski, Elżbieta Jagielska, Elżbieta Nowak, Janusz M. Bujnicki, Filip Stefaniak, Dorota Niedziałek, Matthias Bochtler & Izabela Sabała
Structural bases of peptidoglycan recognition by lysostaphin SH3b domain
Scientific Reports, volume 9, 5965, 2019 | DOI: 10.1038/s41598-019-42435-z
IF: 4.122; 5-Year IF: 4.609
Topics:
Diana Toczydlowska-Socha, Magdalena M. Zielinska, Malgorzata Kurkowska, Astha, Catarina F. Almeida, Filip Stefaniak, Elzbieta Purta, Janusz M. Bujnicki
Phil. Trans. R. Soc. B 2018 373, 20180161, 2018 | DOI: 10.1098/rstb.2018.0161
IF: 5.666 (2017); 5-Year IF: 7.192
Visible also as: D Toczydlowska-Socha, M Kurkowska, M Zielinska, A Joshi, C Almeida, E Purta, F Stefaniak, J Bujnicki, FEBS OPEN BIO 9, 121-122, 2019.
Topics:
A Ponce-Salvatierra, R Pluta, E Skowronek, M Orlowska, B Baginski, M Kurkowska, E Purta, P Ghosh, T Wirecki, F Stefaniak, JM Bujnicki
FEBS OPEN BIO, 9, 243-243, 2019.
Topics:
Rafał Moszczyński-Pętkowski, Jakub Majer, Małgorzata Borkowska, Łukasz Bojarski, Sylwia Janowska, Mikołaj Matłoka, Filip Stefaniak, Damian Smuga, Katarzyna Bazydło, Krzysztof Dubiel, Maciej Wieczorek
European Journal of Medicinal Chemistry 155, 15 July, 2018, Pages 96-116 | DOI: 10.1016/j.ejmech.2018.05.043
IF: 4.519; 5-Year IF: 4.187
Topics:
Mazur M, Bartoszewicz A, Dymek B, Salamon M, Andryianau G, Kowalski M, Olejniczak S, Matyszewski K, Pluta E, Borek B, Stefaniak F, Zagozdzon A, Mazurkiewicz M, Koralewski R, Czestkowski W, Piotrowicz M, Niedziejko P, Gruza MM, Dzwonek K, Golebiowski A, Golab J, Olczak J
Bioorg Med Chem Lett. Volume 28, Issue 3, 1 February 2018, Pages 310-314 | DOI: 10.1016/j.bmcl.2017.12.047
IF: 2.454; 5-Year IF: 2.286
Topics:
Foik IP, Tuszynska I, Feder M, Purta E, Stefaniak F, Bujnicki JM
Eur J Med Chem Volume 146, 25 February 2018, Pages 60-67 | DOI: 10.1016/j.ejmech.2017.11.032
IF: 4.519; 5-Year IF: 4.187
Topics:
Boccaletto P, Magnus M, Almeida C, Zyla A, Astha, Pluta R, Baginski B, Jankowska E, Dunin-Horkawicz S, Wirecki T, Boniecki M, Stefaniak F, Bujnicki JM
Nucleic Acids Res. 2018 Jan 4;46(D1):D202-D205. | DOI: 10.1093/nar/gkx966
IF: 10.162
Topics:
Paweł Brzuzan, Hanna Mazur Marzec, Filip Stefaniak, Maciej Woźny, Maciej Florczyk
ENVIRONMENTAL BIOTECHNOLOGY 14 (1) 2018; Pages 1-4 | DOI: 10.14799/ebms301
Topics:
Zofia Iskierko, Piyush Sindhu Sharma, Daniel Prochowicz, Krzysztof Fronc, Francis D'Souza, Diana Toczydlowska, Filip Stefaniak, Krzysztof Noworyta
ACS Appl. Mater. Interfaces, 2016, 8 (31), pp 19860–19865 | DOI: 10.1021/acsami.6b05515
IF: 7.504
Topics:
Filip Stefaniak
Front. Environ. Sci., 01 December 2015 | DOI: 10.3389/fenvs.2015.00077
IF: 4.581
Topics:
Filip Stefaniak, Ewa Chudyk (Joint First Authorship), Michael Bodkin, Wayne Dawson, Janusz M. Bujnicki
WIREs Comput Mol Sci 2015, 5:425–439. | DOI: 10.1002/wcms.1226
IF: 14.016
Topics:
Anna Bujak, Filip Stefaniak (Joint First Authorship), Daria Zdzalik, Paulina Grygielewicz, Barbara Dymek, Marcin Zagozda, Pawel Gunerka, Monika Lamparska-Przybysz, Krzysztof Dubiel, Maciej Wieczoreka and Karolina Dzwonek
MedChemComm 6 (8), 2015, 1564-1572 | DOI: 10.1039/C5MD00090D
IF: 2.608